The teaching team of the Department of Laboratory Medicine, West China School of Medicine, Sichuan University takes scientific spirit, craftsmanship spirit, and medical humanities spirit as the goal, combines the core knowledge of clinical microbiology laboratory technology course with cases of coronavirus disease 2019 prevention and control, drug resistance monitoring, and scientists’ deeds, and adopts strategies such as hot debate and special report to achieve the integration of knowledge and value. The actual effectiveness of this model has been verified through the assessment of students’ abilities and values. This article introduces the course-based ideological and political education construction mentioned above, aiming to explore the integration path of course-based ideological and political education in the clinical microbiology laboratory technology, and construct a new teaching model that combines professional competence and value guidance.